Chromatin Immunoprecipitation

MicroRNA genes are transcribed by RNA polymerase II

MicroRNA / RNA polymerase / Gene Silencing / Biological Sciences / RNA interference / Cell line / Humans / Chromatin / microRNAs / HeLa cells / Chromatin Immunoprecipitation / Base Sequence / Gene Expression Regulation / Molecular Sequence Data / Cell line / Humans / Chromatin / microRNAs / HeLa cells / Chromatin Immunoprecipitation / Base Sequence / Gene Expression Regulation / Molecular Sequence Data

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A probabilistic generative model for GO enrichment analysis

Biological Sciences / Environmental Sciences / Humans / Gene ontology / Nucleic Acids / Genes / Amino Acids / Chip / Chromatin Immunoprecipitation / Very high throughput / Gene expression profiling / Generic model / Probabilistic Model / Genes / Amino Acids / Chip / Chromatin Immunoprecipitation / Very high throughput / Gene expression profiling / Generic model / Probabilistic Model

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Mutant K-Ras increases GSK-3β gene expression via an ETS-p300 transcriptional complex in pancreatic cancer

Immunohistochemistry / Pancreatic Cancer / Gene expression / Humans / Mutation / Mice / Animals / Oncogene / Mitogen Activated Protein Kinase / Clinical Sciences / Chromatin Immunoprecipitation / Mice / Animals / Oncogene / Mitogen Activated Protein Kinase / Clinical Sciences / Chromatin Immunoprecipitation

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HDAC Inhibitors Correct Frataxin Deficiency in a Friedreich Ataxia Mouse Model

Enzyme Inhibitors / Gene expression / Multidisciplinary / Cerebellum / Mice / Animals / Histone Modification / PLoS one / Chromatin / Introns / Histones / Mouse Model / Microarray Analysis / Myocardium / Chromatin Immunoprecipitation / Western blot / Acetylation / Neurodegenerative Disease / Histone deacetylase inhibitor / Nervous System / Autosomal Recessive / Acute Toxicity / Cardiac Disease / Friedreich Ataxia / Gene expression profiling / Histone deacetylase inhibitors / Iron binding proteins / Animals / Histone Modification / PLoS one / Chromatin / Introns / Histones / Mouse Model / Microarray Analysis / Myocardium / Chromatin Immunoprecipitation / Western blot / Acetylation / Neurodegenerative Disease / Histone deacetylase inhibitor / Nervous System / Autosomal Recessive / Acute Toxicity / Cardiac Disease / Friedreich Ataxia / Gene expression profiling / Histone deacetylase inhibitors / Iron binding proteins

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FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription

Biological Sciences / Humans / Methylation / Cell / Human Genome / Histones / Estrogens / Chromatin Immunoprecipitation / Histone Code / Estrogen receptor alpha / Histones / Estrogens / Chromatin Immunoprecipitation / Histone Code / Estrogen receptor alpha

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Identification of Transcription Factor Binding Sites in Streptomyces coelicolor A3(2) by Phylogenetic Comparison

Bioinformatics / Cognitive Science / Algorithms / Expert Systems / Computational Biology / Gene regulation / Biological Chemistry / Transcription Factors / Gene expression / Biological Sciences / DNA / Drosophila / Software / Humans / Standard Deviation / Mathematical Sciences / Mice / Animals / Local Search / Cyclosporine / Transcription Factor / CHEMICAL SCIENCES / Bayesian Network / Human Genome / Rats / Chromatin Immunoprecipitation / Probabilistic Method / Model Generation / Base Sequence / DNA binding proteins / Binding Site / Particle Swarm Optimizer / Computational Method / Nucleotides / Biochemistry and cell biology / Gene Expression Regulation / Interleukin / Markov model / Gene regulation / Biological Chemistry / Transcription Factors / Gene expression / Biological Sciences / DNA / Drosophila / Software / Humans / Standard Deviation / Mathematical Sciences / Mice / Animals / Local Search / Cyclosporine / Transcription Factor / CHEMICAL SCIENCES / Bayesian Network / Human Genome / Rats / Chromatin Immunoprecipitation / Probabilistic Method / Model Generation / Base Sequence / DNA binding proteins / Binding Site / Particle Swarm Optimizer / Computational Method / Nucleotides / Biochemistry and cell biology / Gene Expression Regulation / Interleukin / Markov model

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Hepatic HNF4α deficiency induces periportal expression of glutamine synthetase and other pericentral enzymes

Gene expression / Hepatology / Transcription Factor / Enzyme / Clinical Sciences / Chromatin Immunoprecipitation / Glutamine Synthetase / Portal vein / Chromatin Immunoprecipitation / Glutamine Synthetase / Portal vein

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Mutant K-Ras increases GSK-3β gene expression via an ETS-p300 transcriptional complex in pancreatic cancer

Immunohistochemistry / Pancreatic Cancer / Gene expression / Humans / Mutation / Mice / Animals / Oncogene / Mitogen Activated Protein Kinase / Clinical Sciences / Chromatin Immunoprecipitation / Mice / Animals / Oncogene / Mitogen Activated Protein Kinase / Clinical Sciences / Chromatin Immunoprecipitation

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The peroxisome proliferator activated receptor regulates malic enzyme gene expression

Immunology / Stem Cells / Kinetics / Mitochondria / Immunology of the Gut / Biological Chemistry / Transcription Factors / Molecular endocrinology / Gene expression / Multidisciplinary / Western blotting / Biological Sciences / DNA / RNA interference / Cell Differentiation / Molecular and cellular biology / Humans / Endothelial Cells / Fatty acids / Mice / G protein-coupled receptors / Animals / Male / Nicotinic Acetylcholine Receptors / RETINOIDS / Adipogenesis / Peroxisome proliferator-activated receptor / Lipid metabolism / Triglycerides / Clinical Sciences / CHEMICAL SCIENCES / Rats / Oxygen / Chromatin Immunoprecipitation / Oral Hypoglycemic Agents / Adipocytes / Peroxisome / Body Weight / Veterinary Sciences / Thiazoles / Base Sequence / Recombinant Proteins / Retinal Diseases / Protein Binding / #Hypolipidemic Agents / Gene Expression Regulation / Biological Chemistry / Transcription Factors / Molecular endocrinology / Gene expression / Multidisciplinary / Western blotting / Biological Sciences / DNA / RNA interference / Cell Differentiation / Molecular and cellular biology / Humans / Endothelial Cells / Fatty acids / Mice / G protein-coupled receptors / Animals / Male / Nicotinic Acetylcholine Receptors / RETINOIDS / Adipogenesis / Peroxisome proliferator-activated receptor / Lipid metabolism / Triglycerides / Clinical Sciences / CHEMICAL SCIENCES / Rats / Oxygen / Chromatin Immunoprecipitation / Oral Hypoglycemic Agents / Adipocytes / Peroxisome / Body Weight / Veterinary Sciences / Thiazoles / Base Sequence / Recombinant Proteins / Retinal Diseases / Protein Binding / #Hypolipidemic Agents / Gene Expression Regulation

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Jun Dimerization Protein 2 Functions as a Progesterone Receptor N-Terminal Domain Coactivator

Cellular Biology / Transcription Factors / Nuclear Receptor / Biological Sciences / Cell line / Molecular and cellular biology / Humans / Animals / Chromatin / Protein Interaction / Histone acetyltransferases / Rats / HeLa cells / Chromatin Immunoprecipitation / Transfection / Glutathione Transferase / Protein Binding / Molecular and cellular biology / Humans / Animals / Chromatin / Protein Interaction / Histone acetyltransferases / Rats / HeLa cells / Chromatin Immunoprecipitation / Transfection / Glutathione Transferase / Protein Binding

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p21 as a Transcriptional Co-Repressor of S-Phase and Mitotic Control Genes

Computational Biology / Cell Cycle / Gene expression / Multidisciplinary / Mitosis / Cell line / Humans / Keratinocytes / Cluster Analysis / PLoS one / Chromatin Immunoprecipitation / Protein Binding / Transcription Start Site / Gene Expression Regulation / Gene expression profiling / Cell line / Humans / Keratinocytes / Cluster Analysis / PLoS one / Chromatin Immunoprecipitation / Protein Binding / Transcription Start Site / Gene Expression Regulation / Gene expression profiling

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The ENCODE Project at UC Santa Cruz

Genomics / Biological Sciences / Software / Environmental Sciences / Humans / Sequence alignment / Nucleic Acids / Interaction Analysis / Computer User Interface Design / Human Genome / Chromatin Immunoprecipitation / Multiple Sequence Alignment / Base Sequence / Internet / Sequence alignment / Nucleic Acids / Interaction Analysis / Computer User Interface Design / Human Genome / Chromatin Immunoprecipitation / Multiple Sequence Alignment / Base Sequence / Internet

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Carboxyl-Terminal Truncated HBx Regulates a Distinct MicroRNA Transcription Program in Hepatocellular Carcinoma Development

MicroRNA / Multidisciplinary / real time PCR / Humans / Hepatocellular Carcinoma / PLoS one / Molecular cloning / microRNAs / Chromatin Immunoprecipitation / Amino Acid Sequence / Base Sequence / Hepatitis B virus / Full Length Movies / Cohort Studies / Cell Growth / Functional Properties / PLoS one / Molecular cloning / microRNAs / Chromatin Immunoprecipitation / Amino Acid Sequence / Base Sequence / Hepatitis B virus / Full Length Movies / Cohort Studies / Cell Growth / Functional Properties

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Epithelial-mesenchymal transition downregulates laminin α5 chain and upregulates laminin α4 chain in oral squamous carcinoma cells

Cell Adhesion / Transcription Factors / Epithelial-Mesenchymal Transition / Cell Differentiation / Humans / Basement Membrane / Female / Transcription Factor / Aged / Oral Squamous Cell Carcinoma (OSCC) / Neoplasm Invasiveness / Mouth Neoplasms / Epithelial cells / Chromatin Immunoprecipitation / Oral Squamous Cell Carcinoma / Protein Binding / Mesenchymal Stromal Cells / Extracellular Matrix Proteins / Down-Regulation / Basement Membrane / Female / Transcription Factor / Aged / Oral Squamous Cell Carcinoma (OSCC) / Neoplasm Invasiveness / Mouth Neoplasms / Epithelial cells / Chromatin Immunoprecipitation / Oral Squamous Cell Carcinoma / Protein Binding / Mesenchymal Stromal Cells / Extracellular Matrix Proteins / Down-Regulation

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Loss of dE2F Compromises Mitochondrial Function

Cell Cycle / Drosophila melanogaster / Mitochondria / Gamma Rays / DNA damage / Apoptosis / Western blotting / Biological Sciences / Humans / Animals / Osteosarcoma / Phenotype / Fluorescent Antibody Technique / Chromatin Immunoprecipitation / Cell Proliferation / Apoptosis / Western blotting / Biological Sciences / Humans / Animals / Osteosarcoma / Phenotype / Fluorescent Antibody Technique / Chromatin Immunoprecipitation / Cell Proliferation

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Retinoblastoma protein acts as Pax 8 transcriptional coactivator

Gene expression / RNA interference / Humans / Thyroid gland / Oncogene / Transcription Factor / Clinical Sciences / Retinoblastoma / Chromatin Immunoprecipitation / Glutathione Transferase / Cell Proliferation / Protein Binding / DNA binding proteins / Binding Site / Gene Expression Regulation / retinoblastoma protein (RB1). / Transcription Factor / Clinical Sciences / Retinoblastoma / Chromatin Immunoprecipitation / Glutathione Transferase / Cell Proliferation / Protein Binding / DNA binding proteins / Binding Site / Gene Expression Regulation / retinoblastoma protein (RB1).

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